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.Rhistory
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.Rhistory
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library(tidyverse)
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library(sf)
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library(tmap)
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remotes::install_github('r-tmap/tmap')
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library(tidyverse)
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library(ggmap)
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library(sf)
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library(osrm)
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library(smoothr)
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library(ggnewscale)
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library(RColorBrewer)
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library(magick)
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library(rsvg)
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library(parallel)
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## add data from WiscTransPortal Crash Data Retrieval Facility ----
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## query: SELECT *
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## FROM DTCRPRD.SUMMARY_COMBINED C
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## WHERE C.CRSHDATE BETWEEN TO_DATE('2022-JAN','YYYY-MM') AND
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## LAST_DAY(TO_DATE('2022-DEC','YYYY-MM')) AND
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## (C.BIKEFLAG = 'Y' OR C.PEDFLAG = 'Y')
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## ORDER BY C.DOCTNMBR
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## Load TOPS data ----
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## load TOPS data for the whole state (crashes involving bikes and pedestrians),
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TOPS_data <- as.list(NULL)
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for (file in list.files(path = "data/TOPS", pattern = "crash-data-download")) {
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message(paste("importing data from file: ", file))
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year <- substr(file, 21, 24)
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csv_run <- read_csv(file = paste0("data/TOPS/",file), col_types = cols(.default = "c"))
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TOPS_data[[file]] <- csv_run
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}
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rm(csv_run)
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TOPS_data <- bind_rows(TOPS_data)
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## clean up data
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TOPS_data <- TOPS_data %>%
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mutate(date = mdy(CRSHDATE),
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age1 = as.double(AGE1),
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age2 = as.double(AGE2),
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latitude = as.double(LATDECDG),
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longitude = as.double(LONDECDG)) %>%
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mutate(month = month(date, label = TRUE),
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year = as.factor(year(date)))
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# county index
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counties <- data.frame(name = c("Dane", "Milwaukee"),
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CNTYCODE = c(13, 40),
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COUNTY = c("DANE", "MILWAUKEE"))
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# Injury Severy Index and Color -------------------------------------------
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# injury severity index
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injury_severity <- data.frame(InjSevName = c("No apparent injury", "Possible Injury", "Suspected Minor Injury","Suspected Serious Injury","Fatality"),
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code = c("O", "C", "B", "A", "K"),
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color = c("#fafa6e", "#edc346", "#d88d2d", "#bd5721", "#9b1c1c"))
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TOPS_data <- left_join(TOPS_data, injury_severity %>% select(InjSevName, code), join_by(INJSVR == code)) %>% mutate(InjSevName = factor(InjSevName, levels = injury_severity$InjSevName))
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# ---- add additional data
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## add school enrollment data
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enrollment <- read_csv(file = "data/Schools/Enrollement_2022-2023/enrollment_by_gradelevel_certified_2022-23.csv",
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col_types = "ccccccccccccciid")
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enrollment_wide <-
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enrollment %>%
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mutate(district_school = paste0(DISTRICT_CODE, SCHOOL_CODE),
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variable_name = paste0(GROUP_BY, "__", GROUP_BY_VALUE)) %>%
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mutate(variable_name = str_replace_all(variable_name, "[ ]", "_")) %>%
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pivot_wider(id_cols = c(district_school, GRADE_LEVEL, SCHOOL_NAME, DISTRICT_NAME, GRADE_GROUP, CHARTER_IND), names_from = variable_name, values_from = PERCENT_OF_GROUP) %>%
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group_by(district_school, SCHOOL_NAME, DISTRICT_NAME, GRADE_GROUP, CHARTER_IND) %>%
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summarise_at(vars("Disability__Autism":"Migrant_Status__[Data_Suppressed]"), mean, na.rm = TRUE)
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district_info <- data.frame(name = c("Madison Metropolitan", "Milwaukee"),
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code = c("3269","3619"),
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walk_boundary_hs = c(1.5, 2),
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walk_boundary_ms = c(1.5, 2),
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walk_boundary_es = c(1.5, 1))
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## load school locations
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WI_schools <- st_read(dsn = "data/Schools/WI_schools.gpkg")
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WI_schools <- left_join(WI_schools %>% mutate(district_school = paste0(SDID, SCH_CODE)),
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enrollment_wide,
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join_by(district_school))
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## load bike LTS networks
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# bike_lts <- as.list(NULL)
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# for(file in list.files("data/bike_lts")) {
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# county <- str_sub(file, 10, -9)
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# lts_run <- st_read(paste0("data/bike_lts/", file))
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# lts_run[["lts"]] <- as.factor(lts_run$LTS_F)
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# bike_lts[[county]] <- lts_run
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# }
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# bike_lts_scale <- data.frame(code = c(1, 2, 3, 4, 9),
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# color = c("#1a9641",
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# "#a6d96a",
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# "#fdae61",
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# "#d7191c",
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# "#d7191c"))
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# register stadia API key ----
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register_stadiamaps(key = substr(read_file(file = "api_keys/stadia_api_key"), 1, 36))
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#options(ggmap.file_drawer = "data/basemaps")
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# dir.create(file_drawer(), recursive = TRUE, showWarnings = FALSE)
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# saveRDS(list(), file_drawer("index.rds"))
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#readRDS(file_drawer("index.rds"))
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#file_drawer("index.rds")
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# load census api key ----
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#census_api_key(key = substr(read_file(file = "api_keys/census_api_key"), 1, 40))
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# load logo
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logo <- image_read(path = "other/BFW_Logo_180_x_200_transparent_background.png")
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school_symbol <- image_read_svg(path = "other/school_FILL0_wght400_GRAD0_opsz24.svg")
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## ---- generate charts/maps ----
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## set parameters of run
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county_focus <- str_to_upper(unique(WI_schools %>% pull(CTY_DIST)))
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#county_focus <- c("DANE")
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#county_focus <- c("MILWAUKEE")
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#county_focus <- c("WINNEBAGO")
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#county_focus <- c("DANE", "MILWAUKEE", "BROWN")
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#county_focus <- c("VILAS", "BROWN")
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#county_focus <- c("BROWN")
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school_type_focus <- unique(WI_schools %>% pull(SCHOOLTYPE))
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#school_type_focus <- unique(WI_schools %>% filter(CTY_DIST %in% str_to_title(county_focus)) %>% pull(SCHOOLTYPE))
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#school_type_focus <- c("High School")
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district_focus <- unique(WI_schools %>% pull(DISTRICT_NAME))
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#district_focus <- unique(WI_schools %>% filter(CTY_DIST %in% str_to_title(county_focus), SCHOOLTYPE %in% school_type_focus, !is.na(DISTRICT_NAME)) %>% pull(DISTRICT_NAME))
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#district_focus <- c("Madison Metropolitan")
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#district_focus <- c("Milwaukee")
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#district_focus <- c("Charter")
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#district_focus <- c("Madison Metropolitan", "Milwaukee")
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#district_focus <- c("Middleton-Cross Plains Area")
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#district_focus <- c("Oregon")
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# WI_schools <- st_as_sf(
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# data.frame(SCHOOL = c("Escuela Verde"),
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# SCHOOLTYPE = c("High School"),
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# CTY_DIST = c("Milwaukee"),
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# DISTRICT_NAME = c("Charter"),
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# district_school = c("001001"),
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# latitude = c(43.02387627250446),
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# longitude = c(-87.95981501028392)
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# ), coords = c("longitude", "latitude"), crs = 4326) %>% mutate(geom = geometry)
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school_number <- length(unique(WI_schools %>% filter(CTY_DIST %in% str_to_title(county_focus),
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SCHOOLTYPE %in% school_type_focus,
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DISTRICT_NAME %in% district_focus) %>%
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pull(district_school)))
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# double check that all schools have a map ----
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double_check <- list(NULL)
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for(school in WI_schools$district_school) {
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school_data <- WI_schools %>% filter(district_school %in% school)
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school_check <- data.frame(district_school = c(school),
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exists = c(file.exists(paste0("~/temp/figures/crash_maps/Crash Maps/",
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str_to_title(school_data %>% pull(CTY_DIST)),
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" County/",
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school_data %>% pull(DISTRICT_NAME),
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" School District/",
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str_replace_all(school_data %>% pull(SCHOOLTYPE), "/","-"),
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"s/",
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str_replace_all(school_data %>% pull(SCHOOL_NAME), "/", "-"),
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" School.pdf"))))
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double_check[[school]] <- school_check
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}
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double_check <- bind_rows(double_check)
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unique(WI_schools %>%
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filter(district_school %in% (double_check %>%
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filter(exists == FALSE) %>%
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pull(district_school)),
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!st_is_empty(geom)) %>%
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pull(DISTRICT_NAME))
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